Quick Reference

Apply this Copier template to an existing able-workflow-copier project (i.e., ./) where you havea already created a datasets/, features/, or models/ module with able-workflow-module-copier to create a new Snakemake rule with the following commands:

copier copy --trust https://github.com/NEU-ABLE-LAB/able-workflow-etl-copier.git ./

If this template has been updated and you would like to apply those updates to your project, run the following command replacing {{ module_type }}, {{ module_name }}, and {{ etl_name }} with the ETL process you would like to update. You can see all the Copier templates that have been applied to your project in the ./copier-answers/ directory. (DO NOT EDIT THESE FILES.)

copier update --trust --answers-file ".copier-answers/etl-{{ module_type }}-{{ module_name }}-{{ etl_name }}.yml" ./